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  • Paper

    Applying Natural Language Processing Neural Network Architectures to Augment Appointment Request Review of Self-Referred Patients to an Academic Medical Center

    • Christopher Aakre

    Applying Natural Language Processing Neural Network Architectures to Augment Appointment Request Review of Self-Referred Patients to an Academic Medical Center


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    Natural Language Processing for Enterprise-scale De-identification of Protected Health Information in Clinical Notes

    • Noor Abu-el-rub ;
    • Jay Urbain ;
    • George Kowalski ;
    • Kristen Osinski ;
    • Robert Spaniol ;
    • Mei Liu ;
    • Bradley Taylor ;
    • Lemuel Waitman

    Natural Language Processing for Enterprise-scale De-identification of Protected Health Information in Clinical Notes


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    Framework for Optimizing Air Ambulance Locations

    • Sabin Ahmed ;
    • Robert Lieberthal ;
    • David Hechtman ;
    • Lauren Rayson ;
    • Douglas Amirault ;
    • Susan Haas

    Framework for Optimizing Air Ambulance Locations


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    Clinicians’ Perspectives in Using Patient-Generated Health Data to Improve Ischemic Heart Disease Management

    • Khuder Alaboud ;
    • Maniza Shahreen ;
    • Humayera Islam ;
    • Tanmoy Paul ;
    • Md Kamruz Zaman Rana ;
    • Anissa Morrison ;
    • Arun Kumar ;
    • Abu Mosa

    Clinicians’ Perspectives in Using Patient-Generated Health Data to Improve Ischemic Heart Disease Management


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    BEHRTDAY: Dynamic Mortality Risk Prediction using Time-Variant COVID-19 Patient Specific Trajectories

    • Alaleh Azhir ;
    • Soheila Talebi ;
    • Louis-Henri Merino ;
    • Thomas Lukasiewicz ;
    • Yikuan Li ;
    • Edgar Argulian ;
    • Jagat Narula ;
    • Borislava Mihaylova

    BEHRTDAY: Dynamic Mortality Risk Prediction using Time-Variant COVID-19 Patient Specific Trajectories


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    Using Shapes of COVID-19 Positive Patient-Specific Trajectories for Mortality Prediction

    • Alaleh Azhir ;
    • Soheila Talebi ;
    • Louis-Henri Merino ;
    • Thomas Lukasiewicz ;
    • Edgar Argulian ;
    • Jagat Narula ;
    • Borislava Mihaylova

    Using Shapes of COVID-19 Positive Patient-Specific Trajectories for Mortality Prediction


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    Automated Dental Cavity Detection System Using Deep Learning and Explainable AI

    • Niharika Bhattacharjee

    Automated Dental Cavity Detection System Using Deep Learning and Explainable AI


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    “Please Advise”: Understanding the Needs of Informal Caregivers of People with Alzheimer’s Disease and Related Dementia from Online Communities Through a Structured Topic Modeling Approach

    • Kerou Cheng ;
    • Zhijun Yin

    “Please Advise”: Understanding the Needs of Informal Caregivers of People with Alzheimer’s Disease and Related Dementia from Online Communities Through a Structured Topic Modeling Approach


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    Exploring the Readability of Ingredients Lists of Food Labels with Existing Metrics

    • Kathryn Cooper ;
    • William Gasper ;
    • Ricky Flores ;
    • Martina Clarke ;
    • Erin Bass ;
    • Leslie Evans ;
    • Jana Ponce

    Exploring the Readability of Ingredients Lists of Food Labels with Existing Metrics


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    Using Natural Language Processing to Classify Serious Illness Communication with Oncology Patients

    • Anahita Davoudi ;
    • Hegler Tissot ;
    • Abigail Doucette ;
    • Peter Gabriel ;
    • Ravi Parikh ;
    • Danielle Mowery ;
    • Stephen Miranda

    Using Natural Language Processing to Classify Serious Illness Communication with Oncology Patients


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    Towards Real-time Bone Drilling Simulation for Anchor Placement in VR Based Arthroscopic Rotator Cuff Surgery Simulation

    • Furkan Dinc ;
    • Khalil Oumimoun ;
    • William Kwabla ;
    • Sinan Kockara ;
    • Tansel Halic ;
    • Sreekanth Arikatla ;
    • Shahryar Ahmadi

    Towards Real-time Bone Drilling Simulation for Anchor Placement in VR Based Arthroscopic Rotator Cuff Surgery Simulation


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    EHR Data Quality Assessment Tools and Issue Reporting Workflows for the ‘All of Us’ Research Program Clinical Data Research Network

    • Noah Engel ;
    • Hongjue Wang ;
    • Xinzhuo Jiang ;
    • Chun Yee Lau ;
    • Jason Patterson ;
    • Nripendra Acharya ;
    • Maura Beaton ;
    • Lina Sulieman ;
    • Nishanth Pavinkurve ;
    • Karthik Natarajan

    EHR Data Quality Assessment Tools and Issue Reporting Workflows for the ‘All of Us’ Research Program Clinical Data Research Network


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    Assessment of Data Quality Variability across Two EHR Systems through a Case Study of Post-Surgical Complications

    • Sunyang Fu ;
    • Andrew Wen ;
    • Gavin Schaeferle ;
    • Patrick Wilson ;
    • Gabriel Demuth ;
    • Xiaoyang Ruan ;
    • Sijia Liu ;
    • Curt Storlie ;
    • Hongfang Liu

    Assessment of Data Quality Variability across Two EHR Systems through a Case Study of Post-Surgical Complications


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    gene2gauss: A multi-view gaussian gene embedding learner for analyzing transcriptomic networks

    • Sudhir Ghandikota ;
    • Anil Jegga

    gene2gauss: A multi-view gaussian gene embedding learner for analyzing transcriptomic networks


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    A Day-to-Day Approach for Automating the Hospital Course Section of the Discharge Summary

    • Vince Hartman ;
    • Thomas Campion

    A Day-to-Day Approach for Automating the Hospital Course Section of the Discharge Summary


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    Temporal Subtyping of Alzheimer’s Disease Using Medical Conditions Preceding Alzheimer’s Disease Onset in Electronic Health Records

    • Zhe He ;
    • Shubo Tian ;
    • Arslan Erdengasileng ;
    • Neil Charness ;
    • Jiang Bian

    Temporal Subtyping of Alzheimer’s Disease Using Medical Conditions Preceding Alzheimer’s Disease Onset in Electronic Health Records


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    Applying FHIR Genomics for Research – From Sequencing to Database

    • Sean Hernandez ;
    • Karen Fairchild ;
    • Mark Pemberton ;
    • Jonathan Dahmer ;
    • Wei Zhang ;
    • Matvey Palchuk ;
    • Umit Topaloglu,

    Applying FHIR Genomics for Research – From Sequencing to Database


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    VitalSeer: The development of a contactless sensing technology based on a user-centric data-driven clinical approach

    • Kendall Ho ;
    • David Rivest-Henault ;
    • Nooshin Jafari ;
    • Michael Lim ;
    • Aida Hassani ;
    • Jennifer Cordeiro ;
    • Bruno Falardeau ;
    • Linda Pecora ;
    • Catherine Pagiatakis ;
    • Faten M’hiri ;
    • Di Jiang

    VitalSeer: The development of a contactless sensing technology based on a user-centric data-driven clinical approach


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    Investigating the impact of weakly supervised data on text mining models of publication transparency: a case study on randomized controlled trials

    • Linh Hoang ;
    • Halil Kilicoglu ;
    • Lan Jianga

    Investigating the impact of weakly supervised data on text mining models of publication transparency: a case study on randomized controlled trials


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    A Privacy-Preserved Transfer Learning Concept to Predict Diabetic Kidney Disease at Out-of-Network Siloed Sites Using an In-Network Federated Model on Real-World Data

    • Humayera Islam ;
    • Khuder Alaboud ;
    • Tanmoy Paul ;
    • Md Kamruz Zaman Rana ;
    • Abu Mosa

    A Privacy-Preserved Transfer Learning Concept to Predict Diabetic Kidney Disease at Out-of-Network Siloed Sites Using an In-Network Federated Model on Real-World Data


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    Moving from predicting hospital deaths by antibiotic-resistant bloodstream bacteremia toward actionable risk reduction using machine learning on electronic health records

    • Inyoung Jun ;
    • Shannan Rich ;
    • Simone Marini ;
    • Zheng Feng ;
    • Jiang Bian ;
    • J. Glenn Morris ;
    • Mattia Prosperi

    Moving from predicting hospital deaths by antibiotic-resistant bloodstream bacteremia toward actionable risk reduction using machine learning on electronic health records


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    Improving the Quality of Suggestions for Medical Text Simplification Tools

    • David Kauchak ;
    • Jorge Apricio ;
    • Gondy Leroy

    Improving the Quality of Suggestions for Medical Text Simplification Tools


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    Clinical Data Cohort Quality Improvement: The Case of the Medication Data in The University of Minnesota’s Clinical Data Repository

    • Sebastien Kiogou ;
    • Chih-Lin Chi ;
    • Rui Zhang ;
    • Sisi Ma ;
    • Terrence J. Adam

    Clinical Data Cohort Quality Improvement: The Case of the Medication Data in The University of Minnesota’s Clinical Data Repository


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    Mining Medication Use Patterns from Clinical Notes for Breast Cancer Patients Through a Two-Stage Topic Modeling Approach

    • Kimberley Kondratieff ;
    • James Brown ;
    • Marily Barron ;
    • Jeremy Warner ;
    • Zhijun Yin

    Mining Medication Use Patterns from Clinical Notes for Breast Cancer Patients Through a Two-Stage Topic Modeling Approach


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    Tracking the COVID-19 outbreak in India through Twitter: Opportunities for social media based global pandemic surveillance

    • Sahithi Lakamana ;
    • Yuan-Chi Yang ;
    • Mohammed Ali Al-Garadi ;
    • Abeed Sarker

    Tracking the COVID-19 outbreak in India through Twitter: Opportunities for social media based global pandemic surveillance


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    CycleGAN with Dynamic Criterion for Malaria Blood Cell Image Synthetization

    • Zhaohui Liang ;
    • Jimmy Huang

    CycleGAN with Dynamic Criterion for Malaria Blood Cell Image Synthetization


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    MetBERT: a generalizable and pre-trained deep learning model for the prediction of metastatic cancer from clinical notes

    • Ke Liu ;
    • Omkar Kulkarni ;
    • Martin Witteveen-Lane ;
    • Bin Chen ;
    • Dave Chesla

    MetBERT: a generalizable and pre-trained deep learning model for the prediction of metastatic cancer from clinical notes


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    Extracting Radiological Findings With Normalized Anatomical Information Using a Span-Based BERT Relation Extraction Model

    • Kevin Lybarger ;
    • Aashka Damani ;
    • Martin Gunn ;
    • Ozlem Uzuner ;
    • Meliha Yetisgen

    Extracting Radiological Findings With Normalized Anatomical Information Using a Span-Based BERT Relation Extraction Model


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    Improving Pharmacovigilance Signal Detection from Clinical Notes with Locality Sensitive Neural Concept Embeddings

    • Justin Mower ;
    • Elmer Bernstam ;
    • Hua Xu ;
    • Sahiti Myneni ;
    • Devika Subramanian ;
    • Trevor Cohen

    Improving Pharmacovigilance Signal Detection from Clinical Notes with Locality Sensitive Neural Concept Embeddings


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    Predicting Hormonal Therapy Medication Discontinuation for Breast Cancer Patients using Structured Data in Electronic Medical Records

    • Congning Ni ;
    • Jeremy Warner ;
    • Bradley Malin ;
    • Zhijun Yin

    Predicting Hormonal Therapy Medication Discontinuation for Breast Cancer Patients using Structured Data in Electronic Medical Records


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    Assessing the Association Between Network-based Provider Communities and Patient Mortality in the Medicare Population with Multiple Chronic Conditions

    • Yoonyoung Park ;
    • Panagiotis Karampourniotis ;
    • Issa Sylla ;
    • Gigi Yuen-Reed ;
    • Amar Das

    Assessing the Association Between Network-based Provider Communities and Patient Mortality in the Medicare Population with Multiple Chronic Conditions


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    ECG and SpO2 Signal-Based Real-Time Sleep Apnea Detection Using Feed-Forward Artificial Neural Network

    • Tanmoy Paul ;
    • Omiya Hassan ;
    • Khuder Alaboud ;
    • Humayera Islam ;
    • Md Kamruz Zaman Rana ;
    • Syed Kamrul Islam ;
    • Abu Mosa

    ECG and SpO2 Signal-Based Real-Time Sleep Apnea Detection Using Feed-Forward Artificial Neural Network


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    Half the picture: Word frequencies reveal racial differences in clinical documentation, but not their causes

    • Jacqueline Penn ;
    • Denis Newman-Griffis

    Half the picture: Word frequencies reveal racial differences in clinical documentation, but not their causes


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    Advancing Interoperability of Patient-level Social Determinants of Health Data to Support COVID-19 Research

    • Jimmy Phuong ;
    • Stephanie Hong ;
    • Matvey Palchuk ;
    • Juan Espinoza ;
    • Daniella Meeker ;
    • David Dorr ;
    • Galina Lozinski ;
    • Charisse Madlock Brown ;
    • William Adams

    Advancing Interoperability of Patient-level Social Determinants of Health Data to Support COVID-19 Research


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    Testing a filtering strategy for systematic reviews: evaluating work savings and recall

    • Randi E. Proescholdt ;
    • Tzu-Kun Hsiao ;
    • Jodi Schneider ;
    • Aaron Cohen ;
    • Marian S. McDonagh ;
    • Neil Smalheiser

    Testing a filtering strategy for systematic reviews: evaluating work savings and recall


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    Multi-Site Testing of an Opioid Prescribing Electronic Clinical Quality Measure Following Elective Primary Total Hip and/or Total Knee Arthroplasties

    • Avery Pullman ;
    • Mica Curtin-Bowen ;
    • Ania Syrowatka ;
    • Alex Businger ;
    • Michael Sainlaire ;
    • Stuart Lipsitz ;
    • Tien Thai ;
    • Troy Li ;
    • David Bates ;
    • Patricia Dykes

    Multi-Site Testing of an Opioid Prescribing Electronic Clinical Quality Measure Following Elective Primary Total Hip and/or Total Knee Arthroplasties


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    Neighborhood Characteristics and COVID-19 Incidence and Mortality in Southeastern Pennsylvania

    • Alexandra Rizaldi ;
    • Sherrie Xie ;
    • Rebecca Hubbard ;
    • Blanca Himes

    Neighborhood Characteristics and COVID-19 Incidence and Mortality in Southeastern Pennsylvania


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    Implementation of a Maternal Child Knowledgebase

    • Donna Santillan ;
    • Mark Santillan ;
    • Heather Davis ;
    • Mark Crooks ;
    • Patrick Flanagan ;
    • Chris Ortman ;
    • Elissa Faro ;
    • Stephen Hunter ;
    • Boyd Knosp

    Implementation of a Maternal Child Knowledgebase


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    Integrating Patient-generated Digital Health Data into Electronic Health Records (EHRs) in Ambulatory Care Settings: EHR Vendor Survey and Interviews

    • Ryan Shaw ;
    • Mina Boazak ;
    • Victoria Tiase ;
    • Gloria Porter ;
    • Jedrek Wosik ;
    • Sarah Bumatay ;
    • LeAnn Michaels ;
    • Julie Stone ;
    • Deborah Cohen ;
    • Rowena Dolor

    Integrating Patient-generated Digital Health Data into Electronic Health Records (EHRs) in Ambulatory Care Settings: EHR Vendor Survey and Interviews


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    Predicting Unplanned 7-day Intensive Care Unit Readmissions with Machine Learning Models for Improved Discharge Risk Assessment

    • Katherine Shi ;
    • Vy Ho ;
    • Joanna Song ;
    • Katelyn Bechler ;
    • Jonathan Chen

    Predicting Unplanned 7-day Intensive Care Unit Readmissions with Machine Learning Models for Improved Discharge Risk Assessment


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    An Informatics Analysis to Identify Sex Disparities and Healthcare Needs for Autism across the United States

    • Nathaniel Stockham ;
    • Kelley Paskov ;
    • Kevin Tabatabaei ;
    • Soren Sutaria ;
    • Bennett Liu ;
    • Jack Kent ;
    • Dennis Wall

    An Informatics Analysis to Identify Sex Disparities and Healthcare Needs for Autism across the United States


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    DaT3M: A Data Tracker for Multi-faceted Management of Multi-site Clinical Research Data Submission, Curation, Master Inventorying, and Sharing

    • Shiqiang Tao ;
    • Licong Cui ;
    • Wei-chun Chou ;
    • Samden Lhatoo ;
    • Guo-qiang Zhang

    DaT3M: A Data Tracker for Multi-faceted Management of Multi-site Clinical Research Data Submission, Curation, Master Inventorying, and Sharing


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    Physician Experience Design (PXD): More Usable Machine Learning Prediction for Clinical Decision Making

    • Lu Wang ;
    • Mark Chignell ;
    • Yilun Zhang ;
    • Andrew Pinto ;
    • Fahad Razak ;
    • Kathleen Sheehan ;
    • Amol Verma

    Physician Experience Design (PXD): More Usable Machine Learning Prediction for Clinical Decision Making


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    Prior Knowledge Enhances Radiology Report Generation

    • Song Wang ;
    • Liyan Tang ;
    • Mingquan Lin ;
    • George Shih ;
    • Ying Ding ;
    • Yifan Peng

    Prior Knowledge Enhances Radiology Report Generation


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    Comparison of Alexa Voice and Audio Interfaces for Home-Based Physical Telerehabilitation

    • Chenhao Wei ;
    • Joseph Finkelstein

    Comparison of Alexa Voice and Audio Interfaces for Home-Based Physical Telerehabilitation


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    Automatic Cohort Determination from Twitter for HIV Prevention amongst Black and Hispanic Men

    • Davy Weissenbacher ;
    • Ivan J. Flores ;
    • Yunwen Wang ;
    • KAREN O’CONNOR ;
    • Siddharth Rawal ;
    • Robin Stevens ;
    • Graciela Gonzalez-Hernandez

    Automatic Cohort Determination from Twitter for HIV Prevention amongst Black and Hispanic Men


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    Predicting Avoidable Emergency Department Visits Using the NHAMCS Dataset

    • Yuyang Yang ;
    • Jingzhi Yu ;
    • Yuan Luo ;
    • Hanyin Wang ;
    • Songzi Liu ;
    • Scott Dresden

    Predicting Avoidable Emergency Department Visits Using the NHAMCS Dataset


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    A Computational Framework for Identifying Age Risks in Drug-Adverse Event Pairs

    • Zhizhen Zhao ;
    • Ruoqi Liu ;
    • Lei Wang ;
    • Lang Li ;
    • Chi Song ;
    • Ping Zhang

    A Computational Framework for Identifying Age Risks in Drug-Adverse Event Pairs


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