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    A UMLS-based Investigation of Laterality in Biomedical Terminologies

    • Rashmie Abeysinghe ;
    • Xubing Hao ;
    • Licong Cui ;
    • GQ Zhang

    A UMLS-based Investigation of Laterality in Biomedical Terminologies


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    epiDonate – distributed serverless data infrastructure for epidemiological studies

    • Jonas Almeida ;
    • Pedro Saint-Maurice ;
    • Bhaumik Patel ;
    • Martin Ferguson ;
    • Stephen Chanock ;
    • Adit Anand ;
    • Daniel Russ ;
    • Michelle Brotzman ;
    • Davin Johnson ;
    • Nicole Gerlanc ;
    • Praphulla Bhawsar ;
    • Charles Matthews ;
    • Amy Berrington de Gonzalez ;
    • Mia Gaudet ;
    • Montserrat Garcia-Closas

    epiDonate – distributed serverless data infrastructure for epidemiological studies


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    Unsupervised Anomaly Detection to Characterize Heterogeneity in Type 2 Diabetes

    • Peniel Argaw ;
    • Jake Kushner ;
    • Isaac Kohane

    Unsupervised Anomaly Detection to Characterize Heterogeneity in Type 2 Diabetes


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    Ochsner Emergency Department Overcrowding Scale (OEDOCS): predicting Emergency Department crowding among diverse academic hospital settings

    • Jonathan Bidwell ;
    • Lixuan Ji ;
    • Nariman Ammar ;
    • Daniel Fort ;
    • Lisa Fort

    Ochsner Emergency Department Overcrowding Scale (OEDOCS): predicting Emergency Department crowding among diverse academic hospital settings


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    Investigating Three Classification Methods for Per/Poly-Fluoroalkyl Substance (PFAS) Exposure from Electronic Health Records And Potential for Bias

    • Lena Davidson ;
    • Mary Regina Boland

    Investigating Three Classification Methods for Per/Poly-Fluoroalkyl Substance (PFAS) Exposure from Electronic Health Records And Potential for Bias


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    High Resolution and Spatiotemporal Place-Based Computable Exposures at Scale

    • Erika Rasnick ;
    • Cole Brokamp

    High Resolution and Spatiotemporal Place-Based Computable Exposures at Scale


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    Automated Curation and AI Workflow Management System for Digital Pathology

    • Cody Bumgardner ;
    • Samuel Armstrong ;
    • Alexandr Virodov ;
    • Caylin Hickey

    Automated Curation and AI Workflow Management System for Digital Pathology


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    Avoiding Biased Clinical Machine Learning Model Performance Estimates in the Presence of Label Selection

    • Conor Corbin ;
    • Michael Baiocchi ;
    • Jonathan Chen

    Avoiding Biased Clinical Machine Learning Model Performance Estimates in the Presence of Label Selection


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    Demographic and Time Trend Analysis of COVID-19 Test Results of Boone County, Missouri

    • Butros Dahu ;
    • Solaiman Khan ;
    • Wei Syuan Li ;
    • Xin Shu ;
    • Henok Woldu ;
    • Mihail Popescu ;
    • Lincoln Sheets ;
    • Grant Scott

    Demographic and Time Trend Analysis of COVID-19 Test Results of Boone County, Missouri


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    Assessing the Predictive and Analytics Capability of Electronic Clinical Data for High-Cost Patients

    • Saathvika Diviti ;
    • Adam Wilcox

    Assessing the Predictive and Analytics Capability of Electronic Clinical Data for High-Cost Patients


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    Detection of Suicidal Behavior and Self-harm Among Children Presenting to Emergency Departments: A Tree-based Classification Approach

    • Juliet Edgcomb ;
    • Chi-hong Tseng ;
    • Mengtong Pan ;
    • Alexandra Klomhaus ;
    • Bonnie Zima

    Detection of Suicidal Behavior and Self-harm Among Children Presenting to Emergency Departments: A Tree-based Classification Approach


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    Automation of Protocoling Advanced MSK Examinations Using Natural Language Processing Techniques

    • Niloufar Eghbali Zarch ;
    • Daniel Siegal ;
    • Chad Klochko ;
    • Mohammad Ghassemi

    Automation of Protocoling Advanced MSK Examinations Using Natural Language Processing Techniques


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    Towards Interpretable Multimodal Predictive Models for Early Mortality Prediction of Hemorrhagic Stroke Patients

    • Forhan Bin Emdad ;
    • Shubo Tian ;
    • Esha Nandy ;
    • Karim Hanna ;
    • Zhe He

    Towards Interpretable Multimodal Predictive Models for Early Mortality Prediction of Hemorrhagic Stroke Patients


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    Natural Language Processing Methods to Identify Oncology Patients at High Risk for Acute Care with Clinical Notes

    • Claudio Fanconi ;
    • Marieke van Buchem ;
    • Tina Hernandez-Boussard

    Natural Language Processing Methods to Identify Oncology Patients at High Risk for Acute Care with Clinical Notes


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    Assessing Intrahospital Care Transition Structures Before and During the COVID-19 Pandemic: Network Analysis Study

    • Yubo Feng ;
    • You Chen ;
    • Mayur Patel ;
    • Jiayi Fu

    Assessing Intrahospital Care Transition Structures Before and During the COVID-19 Pandemic: Network Analysis Study


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    Towards an Open-Source Platform to Harmonize and Share Research Results from COVID-19 Interventional and Observational Studies

    • Irena Parvanova ;
    • Joseph Finkelstein ;
    • Kirill Borziak

    Towards an Open-Source Platform to Harmonize and Share Research Results from COVID-19 Interventional and Observational Studies


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    Mild Cognitive Impairment: Data-Driven Prediction, Risk Factors, and Workup

    • Sajjad Fouladvand ;
    • Morteza Noshad ;
    • Mary Goldstein ;
    • VJ Periyakoil ;
    • Jonathan Chen

    Mild Cognitive Impairment: Data-Driven Prediction, Risk Factors, and Workup


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    The Association of Learning Health System Practicing Hospitals and other Health Information Interested Hospitals with Patient-Generated Health Data Uptake

    • Ibukun Fowe

    The Association of Learning Health System Practicing Hospitals and other Health Information Interested Hospitals with Patient-Generated Health Data Uptake


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    Understanding Barriers to the Collection of Mobile and Wearable Device Data to Monitor Health and Cognition in Older Adults: A Scoping Review

    • Ibukun Fowe

    Understanding Barriers to the Collection of Mobile and Wearable Device Data to Monitor Health and Cognition in Older Adults: A Scoping Review


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    Gender-based Language Differences in Letters of Recommendation

    • Sunyang Fu ;
    • Darren Calley ;
    • Veronica Rasmussen ;
    • Marissa Hamilton ;
    • Christopher Lee ;
    • Austin Kalla ;
    • Hongfang Liu

    Gender-based Language Differences in Letters of Recommendation


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    Deep learning-based joint detection in Rheumatoid arthritis hand radiographs

    • Daryl Fung ;
    • Qian Liu ;
    • Saqib Islam ;
    • Leann Lac ;
    • Liam O'Neil ;
    • carol Hitchon ;
    • Pingzhao Hu

    Deep learning-based joint detection in Rheumatoid arthritis hand radiographs


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    Assessing Patient Perspectives of a Cancer Telerehabilitation Platform Using Thematic Analysis of Semi-Structured Qualitative Interviews

    • Aileen Gabriel ;
    • Irena Parvanova ;
    • Te-yi Tsai ;
    • Joseph Finkelstein

    Assessing Patient Perspectives of a Cancer Telerehabilitation Platform Using Thematic Analysis of Semi-Structured Qualitative Interviews


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    Mining Correlation between Fluid Intelligence and Whole-brain Large Scale Structural Connectivity

    • Sumita Garai ;
    • Frederick Xu ;
    • Duy Anh Duong-Tran ;
    • Yize Zhao ;
    • Li Shen

    Mining Correlation between Fluid Intelligence and Whole-brain Large Scale Structural Connectivity


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    Supporting Clinical Care: SOFA on FHIR

    • Margaux Gatrio ;
    • Ariane Morassi Sasso ;
    • Julian Sass ;
    • Erwin Böttinger ;
    • Jonathan Edelman ;
    • Philipp Landgraf

    Supporting Clinical Care: SOFA on FHIR


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    Interpretable Stratification for Chronic Kidney Disease Progression Based on Time to Event Analysis

    • Mohamed Ghalwash ;
    • Akira Koseki ;
    • TOSHIYA IWAMORI ;
    • Michiharu Kudo ;
    • Pablo Meyer

    Interpretable Stratification for Chronic Kidney Disease Progression Based on Time to Event Analysis


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    Automatic Detection of Intimate Partner Violence Victims from Social Media for Proactive Delivery of Support

    • Yuting Guo ;
    • Sangmi Kim ;
    • Elise Warren ;
    • Yuan-Chi Yang ;
    • Sahithi Lakamana ;
    • Abeed Sarker

    Automatic Detection of Intimate Partner Violence Victims from Social Media for Proactive Delivery of Support


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    Generalizable Natural Language Processing Framework for Migraine Reporting from Social Media

    • Yuting Guo ;
    • Nikita Chhabra ;
    • Yi-Chieh Chen ;
    • Chieh-Ju Chao ;
    • Adnan Shahid ;
    • Wan-Ju Chao ;
    • Abeed Sarker ;
    • Imon Banerjee ;
    • Swati Rajwal ;
    • Paul Menell ;
    • Sahithi Lakamana ;
    • Todd Schwedt ;
    • Chia-Chun Chiang

    Generalizable Natural Language Processing Framework for Migraine Reporting from Social Media


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    A Data Mining Pipeline for COVID-19 Vaccine Safety Analysis Based on Large Electric Health Record

    • Yan Huang ;
    • Xiaojin Li ;
    • Hulin Wu ;
    • GQ Zhang

    A Data Mining Pipeline for COVID-19 Vaccine Safety Analysis Based on Large Electric Health Record


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    Principal Investigators’ Perceptions on Factors Associated with Successful Recruitment in Clinical Trials

    • Betina Idnay ;
    • Alex Butler ;
    • Yilu Fang ;
    • Ziran Li ;
    • Junghwan Lee ;
    • Casey Ta ;
    • Cong Liu ;
    • Brenda Ruotolo ;
    • Chi Yuan ;
    • George Hripcsak ;
    • Elaine Larson ;
    • Chunhua Weng

    Principal Investigators’ Perceptions on Factors Associated with Successful Recruitment in Clinical Trials


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    Timeline Registration for Electronic Health Records

    • Shiyi Jiang ;
    • Rungang Han ;
    • Krishnendu Chakrabarty ;
    • Charles Page ;
    • Anru Zhang ;
    • William Stead

    Timeline Registration for Electronic Health Records


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    Dental CLAIRES: Contrastive LAnguage Image REtrieval Search for Dental Research

    • Tanjida Kabir ;
    • Luyao Chen ;
    • Muhammad Walji ;
    • Luca Giancardo ;
    • Xiaoqian Jiang ;
    • Shayan Shams

    Dental CLAIRES: Contrastive LAnguage Image REtrieval Search for Dental Research


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    Comprehensive Analysis of Electronic Health Records to Characterize The Association Between Intimate Partner Violence and Mental Health

    • Gunnur Karakurt ;
    • Serhan Yilmaz ;
    • Meera Kumari ;
    • Keming Gao ;
    • Mehmet Koyuturk

    Comprehensive Analysis of Electronic Health Records to Characterize The Association Between Intimate Partner Violence and Mental Health


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    Significance of Intraoperative Medication Data and Predictive Model Selection for Predicting Postoperative First-Time Atrial Fibrillation

    • Jingzhi Yu ;
    • Ethan Johnson ;
    • Yu Deng ;
    • Shibo Zhang ;
    • David Melnick ;
    • Mozziyar Etemadi ;
    • Abel Kho

    Significance of Intraoperative Medication Data and Predictive Model Selection for Predicting Postoperative First-Time Atrial Fibrillation


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    Developing an LSTM Model to Identify Surgical Site Infections using Electronic Healthcare Records

    • Amber Kiser ;
    • Karen Eilbeck ;
    • Brian Bucher

    Developing an LSTM Model to Identify Surgical Site Infections using Electronic Healthcare Records


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    Discovering Precision AD Biomarkers with Varying Prognosis Effects in Genetics Driven Subpopulations

    • Brian Lee ;
    • Kwangsik Nho ;
    • Junwen Wang ;
    • Andrew Saykin ;
    • Li Shen

    Discovering Precision AD Biomarkers with Varying Prognosis Effects in Genetics Driven Subpopulations


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    A Query Engine for Self-controlled Case Series: with an application to COVID-19 EHR data

    • Xiaojin Li ;
    • Yan Huang ;
    • Licong Cui ;
    • Guo-qiang Zhang

    A Query Engine for Self-controlled Case Series: with an application to COVID-19 EHR data


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    TRESTLE: Toolkit for Reproducible Execution of Speech, Text and Language Experiments

    • Changye Li ;
    • Weizhe Xu ;
    • Trevor Cohen ;
    • Martin Michalowski ;
    • Serguei Pakhomov

    TRESTLE: Toolkit for Reproducible Execution of Speech, Text and Language Experiments


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    Evaluate underdiagnosis and overdiagnosis bias of deep learning model on primary open-angle glaucoma diagnosis in under-served patient populations

    • Mingquan Lin ;
    • Yunyu Xiao ;
    • Bojian Hou ;
    • Tingyi Wanyan ;
    • Mohit Manoj Sharma ;
    • Zhangyang Wang ;
    • Fei Wang ;
    • Sarah Van Tassel ;
    • Yifan Peng

    Evaluate underdiagnosis and overdiagnosis bias of deep learning model on primary open-angle glaucoma diagnosis in under-served patient populations


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    Integrating Comorbidity Knowledge for Alzheimer's Disease Drug Repurposing using Multi-task Graph Neural Network

    • Ko-Hong Lin ;
    • Kang-Lin Hsieh ;
    • Xiaoqian Jiang ;
    • Yejin Kim

    Integrating Comorbidity Knowledge for Alzheimer's Disease Drug Repurposing using Multi-task Graph Neural Network


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    Can Race-sensitive Biomedical Embeddings Improve Healthcare Predictive Models?

    • Hao Liu ;
    • Nour Moustafa-Fahmy ;
    • Casey Ta ;
    • Chunhua Weng

    Can Race-sensitive Biomedical Embeddings Improve Healthcare Predictive Models?


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    CRENO: An ontology to model concepts relating to culture, race, ethnicity, and nationality for health data

    • Eloisa Nguyen ;
    • Muhammad Amith ;
    • Anne Nordberg ;
    • Lu Tang ;
    • Marcelline Harris ;
    • Cui Tao

    CRENO: An ontology to model concepts relating to culture, race, ethnicity, and nationality for health data


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    Characterizing Disparities in the Treatment of Intimate Partner Violence

    • Cerag Oguztuzun ;
    • Mehmet Koyuturk ;
    • Gunnur Karakurt

    Characterizing Disparities in the Treatment of Intimate Partner Violence


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    Toward Improving Health Literacy in Patient Education Materials with Neural Machine Translation Models

    • David Oniani ;
    • Sreekanth Sreekumar ;
    • Renuk DeAlmeida ;
    • Dinuk DeAlmeida ;
    • Young Ji Lee ;
    • Yiye Zhang ;
    • Leming Zhou ;
    • Yanshan Wang

    Toward Improving Health Literacy in Patient Education Materials with Neural Machine Translation Models


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    H4H: A Comprehensive Repository of Housing Resources for Homelessness

    • Samuel Osebe ;
    • Jack Tsai ;
    • Hong Yu

    H4H: A Comprehensive Repository of Housing Resources for Homelessness


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    Automated Fidelity Assessment for Strategy Training in Inpatient Rehabilitation using Natural Language Processing

    • Hunter Osterhoudt ;
    • Courtney Schneider ;
    • Haneef Mohammad ;
    • Minmei Shih ;
    • Alexandra Harper ;
    • Leming Zhou ;
    • Elizabeth Skidmore ;
    • Yanshan Wang

    Automated Fidelity Assessment for Strategy Training in Inpatient Rehabilitation using Natural Language Processing


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    Enrichment of a Data Lake to Support Population Health Outcomes Studies Using Social Determinants Linked EHR Data

    • Md Kamruz Zaman Rana ;
    • Xing Song ;
    • Humayera Islam ;
    • Tanmoy Paul ;
    • Khuder Alaboud ;
    • Lemuel Waitman ;
    • Abu Mosa

    Enrichment of a Data Lake to Support Population Health Outcomes Studies Using Social Determinants Linked EHR Data


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    Hierarchical Concept Relations Improve Detection of Off-Label Drug Use in Electronic Health Records Data

    • Kayla Schiffer ;
    • Annie Choi ;
    • Chunhua Weng

    Hierarchical Concept Relations Improve Detection of Off-Label Drug Use in Electronic Health Records Data


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    Linking Ambient NO2 Pollution Measures with Electronic Health Record Data to Study Asthma Exacerbations

    • Alana Schreibman ;
    • Sherrie Xie ;
    • Rebecca Hubbard ;
    • Blanca Himes

    Linking Ambient NO2 Pollution Measures with Electronic Health Record Data to Study Asthma Exacerbations


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    Using Explainable AI to cross-validate socio-economic disparities among covid-19 patient mortality

    • Li Shi ;
    • Redoan Rahman ;
    • Esther Melamed ;
    • Jacek Gwizdka ;
    • Justin Rousseau ;
    • Ying Ding

    Using Explainable AI to cross-validate socio-economic disparities among covid-19 patient mortality


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    DETECT: Feature extraction method for disease trajectory modeling in electronic health records

    • Pankhuri Singhal ;
    • Lindsay Guare ;
    • Colleen Morse ;
    • Anastasia Lucas ;
    • Marta Byrska-Bishop ;
    • Marie Guerraty ;
    • Dokyoon Kim ;
    • Marylyn Ritchie ;
    • Anurag Verma

    DETECT: Feature extraction method for disease trajectory modeling in electronic health records


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    Feasibility of the Genetic Information Assistant Chatbot to Provide Genetic Education and Study Genetic Test Adoption Among Pancreatic Cancer Patients at Johns Hopkins Hospital

    • Nidhi Soley ;
    • Alison Klein ;
    • Casey Taylor ;
    • Michelle Nguyen ;
    • Gabriella Ewachiw ;
    • Hridaya Shah ;
    • Joann Bodurtha

    Feasibility of the Genetic Information Assistant Chatbot to Provide Genetic Education and Study Genetic Test Adoption Among Pancreatic Cancer Patients at Johns Hopkins Hospital


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    The Hidden Patient Connections: Predicting Hormonal Therapy Medication Discontinuation Using Hypergraph Neural Network on Clinical Communications

    • Qingyuan Song ;
    • Yunfei Hu ;
    • Congning Ni ;
    • Zhijun Yin

    The Hidden Patient Connections: Predicting Hormonal Therapy Medication Discontinuation Using Hypergraph Neural Network on Clinical Communications


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    Extracting Temporal Expressions of First Seizure Onset from Epilepsy Patient Discharge Summaries

    • Shiqiang Tao ;
    • Rashmie Abeysinghe ;
    • Blanca Talavera De La Esperanza ;
    • Samden Lhatoo ;
    • Guo-qiang Zhang ;
    • Licong Cui

    Extracting Temporal Expressions of First Seizure Onset from Epilepsy Patient Discharge Summaries


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    Comparing Amyloid Imaging Normalization Strategies for Alzheimer's Disease Classification using an Automated Machine Learning Pipeline

    • Boning Tong ;
    • Shannon Leigh Risacher ;
    • Jingxuan Bao ;
    • Yanbo Feng ;
    • Xinkai Wang ;
    • Marylyn Ritchie ;
    • Jason H. Moore ;
    • Ryan Urbanowicz ;
    • Andrew Saykin ;
    • Li Shen

    Comparing Amyloid Imaging Normalization Strategies for Alzheimer's Disease Classification using an Automated Machine Learning Pipeline


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    Efficient Federated Kinship Relationship Identification

    • Xinyue Wang ;
    • Leonard Dervishi ;
    • Wentao Li ;
    • Xiaoqian Jiang ;
    • Erman Ayday ;
    • Jaideep Vaidya

    Efficient Federated Kinship Relationship Identification


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    Exploring Automated Machine Learning for Cognitive Outcome Prediction from Multimodal Brain Imaging using STREAMLINE

    • Xinkai Wang ;
    • Yanbo Feng ;
    • Boning Tong ;
    • Jingxuan Bao ;
    • Marylyn Ritchie ;
    • Andrew Saykin ;
    • Jason Moore ;
    • Ryan Urbanowicz ;
    • Li Shen

    Exploring Automated Machine Learning for Cognitive Outcome Prediction from Multimodal Brain Imaging using STREAMLINE


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    A new deep learning framework to process Matrix-assisted Laser Desorption/Ionisation Mass Spectrometry Imaging (MALDI-MSI) data of Tissue Microarrays (TMAs)

    • Tingyi Wanyan ;
    • Qi Sun ;
    • Pamela Grizzard ;
    • Jinze Liu ;
    • Yifan Peng ;
    • Mingquan Lin

    A new deep learning framework to process Matrix-assisted Laser Desorption/Ionisation Mass Spectrometry Imaging (MALDI-MSI) data of Tissue Microarrays (TMAs)


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    Using Health Forum Data to Assess User Needs for mHealth App Development: A Feasibility Study on Alzheimer’s Disease

    • Danny Wu ;
    • Shwetha Bindhu

    Using Health Forum Data to Assess User Needs for mHealth App Development: A Feasibility Study on Alzheimer’s Disease


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    Geospatial divide in real-world EHR data: Analytical workflow to assess regional biases and potential impact on health equity

    • Serena Jinchen Xie ;
    • Andrea Hartzler ;
    • Stephen Mooney ;
    • Abhishek Pratap ;
    • Sean Mooney ;
    • Flavia Kapos ;
    • Cynthia Chen ;
    • Kari Stephens

    Geospatial divide in real-world EHR data: Analytical workflow to assess regional biases and potential impact on health equity


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    Hypergraph Transformers for EHR-based Clinical Predictions

    • Ran Xu ;
    • Mohammed Ali ;
    • Joyce Ho ;
    • Carl Yang

    Hypergraph Transformers for EHR-based Clinical Predictions


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    Context Variance Evaluation of Pretrained Language Models for Prompt-based Biomedical Knowledge Probing

    • Zonghai Yao ;
    • Yi Cao ;
    • zhichao yang ;
    • Hong Yu

    Context Variance Evaluation of Pretrained Language Models for Prompt-based Biomedical Knowledge Probing


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    Automated Type 2 Diabetes Case and Control Identification from the MIMIC-IV Database

    • Wanheng Zhang ;
    • Tru Cao

    Automated Type 2 Diabetes Case and Control Identification from the MIMIC-IV Database


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    Data Imputation for Clinical Trial Emulation: A Case Study on Impact of Intracranial Pressure Monitoring for Traumatic Brain Injury

    • Zhizhen Zhao ;
    • Ping Zhang ;
    • Henry Xiang ;
    • Ruoqi Liu ;
    • Jonathan Groner

    Data Imputation for Clinical Trial Emulation: A Case Study on Impact of Intracranial Pressure Monitoring for Traumatic Brain Injury


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    Generalizing through Forgetting - Domain Generalization for Symptom Event Extraction in Clinical Notes

    • Sitong Zhou ;
    • Kevin Lybarger ;
    • Mari Ostendorf ;
    • Meliha Yetisgen

    Generalizing through Forgetting - Domain Generalization for Symptom Event Extraction in Clinical Notes


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    Collaborative Program to Evaluate Real World Data for Use in Clinical Studies and Regulatory Decision Making

    • Meredith Zozus ;
    • Byeong Yeob Choi ;
    • Maryam Garza ;
    • Rhonda Facile ;
    • Holly Lanham ;
    • Zhan Wang ;
    • Bill Sanns ;
    • Muayad Maallah ;
    • Henry Wei ;
    • Amy Cramer ;
    • Eric Eisenstein

    Collaborative Program to Evaluate Real World Data for Use in Clinical Studies and Regulatory Decision Making


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