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  • Poster

    Pharmacy fill data as an indicator of patient adherence

    • Richard K. Belew

    Manuscript Type: Poster

    Pharmacy fill data as an indicator of patient adherence


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    Network Visualization and Analysis of Pregnant Uterine Contractions

    • Suresh Bhavnani

    Manuscript Type: Poster

    Network Visualization and Analysis of Pregnant Uterine Contractions


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    How Circos Ideograms Complement Networks: A Case Study in Asthma

    • Suresh Bhavnani

    Manuscript Type: Poster

    How Circos Ideograms Complement Networks: A Case Study in Asthma


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    Linking Genotype to Phenotype: A Pilot Project to Create a Research Data Warehouse of Biospecimen and "Omic" Information

    • Xia Bi

    Manuscript Type: Poster

    Linking Genotype to Phenotype: A Pilot Project to Create a Research Data Warehouse of Biospecimen and "Omic" Information


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    Developing an Ontology-driven Data Collection Application

    • Daniela Bourges-Waldegg

    Manuscript Type: Poster

    Developing an Ontology-driven Data Collection Application


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    Cancer Informatics Services: an infrastructure for translational cancer biomarker studies

    • Uma Chandran

    Manuscript Type: Poster

    Cancer Informatics Services: an infrastructure for translational cancer biomarker studies


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    A novel bioinformatics framework to explore the existing possibility of new drug target proteins in the human Malaria parasite

    • Yu-Tien Chang

    Manuscript Type: Poster

    A novel bioinformatics framework to explore the existing possibility of new drug target proteins in the human Malaria parasite


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    Protein-Network Modeling of Prostate Cancer Gene Signatures Reveals Essential Pathways in Disease Recurrence

    • James Chen

    Manuscript Type: Poster

    Protein-Network Modeling of Prostate Cancer Gene Signatures Reveals Essential Pathways in Disease Recurrence


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    Genome-Wide Methylation Analysis of CpG Island Methylator Phenotype Cancers

    • Miew Keen Choong

    Manuscript Type: Poster

    Genome-Wide Methylation Analysis of CpG Island Methylator Phenotype Cancers


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    Proposed Agent-directed Composition of Biomedical and Simulation Ontologies: Facilitating Dynamic Hypothesis Instantiation

    • Scott Christley

    Manuscript Type: Poster

    Proposed Agent-directed Composition of Biomedical and Simulation Ontologies: Facilitating Dynamic Hypothesis Instantiation


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    Modeling the Expansion of Cancer Registry Services Across Distributed Grid Computer Systems Using a Sampling Based Approach

    • Martin Cryer

    Manuscript Type: Poster

    Modeling the Expansion of Cancer Registry Services Across Distributed Grid Computer Systems Using a Sampling Based Approach


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    Drug-Gene Retriever: An unsupervised system to identify drug-gene relationships

    • Donald M. Dempsey

    Manuscript Type: Poster

    Drug-Gene Retriever: An unsupervised system to identify drug-gene relationships


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    MOUSER: An Online Mouse Registry for Biomedical Researchers

    • Donald M. Dempsey

    Manuscript Type: Poster

    MOUSER: An Online Mouse Registry for Biomedical Researchers


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    Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

    • Emily Doughty

    Manuscript Type: Poster

    Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature


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    FunDO: A Web Tool Exploring Genes Using Functional Disease Ontology Annotations

    • Jared Flatow

    Manuscript Type: Poster

    FunDO: A Web Tool Exploring Genes Using Functional Disease Ontology Annotations


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    Discovering biomedical research resources in text: an ontology-driven approach using curated data for incremental retraining

    • H Frost

    Manuscript Type: Poster

    Discovering biomedical research resources in text: an ontology-driven approach using curated data for incremental retraining


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    Designing Effective Clinical Trials Using Simulations

    • Vincent Fusaro

    Manuscript Type: Poster

    Designing Effective Clinical Trials Using Simulations


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    Managing Variability in Co-Expression Network Construction

    • David Gibbs

    Manuscript Type: Poster

    Managing Variability in Co-Expression Network Construction


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    Paradigm Integrated Pathway Analysis of Drug Subtype Sensitivity (DSS)

    • Ted Goldstein

    Manuscript Type: Poster

    Paradigm Integrated Pathway Analysis of Drug Subtype Sensitivity (DSS)


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    A Metamodel for Collaborative Sharing of Biomedical Research Experiments

    • Joseph M. Gunnels

    Manuscript Type: Poster

    A Metamodel for Collaborative Sharing of Biomedical Research Experiments


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    Finding Text in Scientific Publications Relevant to Phenotypic Concepts

    • Saeed Hassanpour

    Manuscript Type: Poster

    Finding Text in Scientific Publications Relevant to Phenotypic Concepts


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    Differential Expression Analysis for Pathways

    • Winston Haynes

    Manuscript Type: Poster

    Differential Expression Analysis for Pathways


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    Mining and Visualization of Pain Descriptors from Clinical Records – A Pilot Study

    • Norris Heintzelman

    Manuscript Type: Poster

    Mining and Visualization of Pain Descriptors from Clinical Records – A Pilot Study


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    PheGenI: an Integrated Resource for Browsing Genetic Association Data

    • Lucia Hindorff

    Manuscript Type: Poster

    PheGenI: an Integrated Resource for Browsing Genetic Association Data


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    The FaceBase Management and Coordination Hub: Development and Design Principles for a Translational BioInformatics Data Portal

    • Harry Hochheiser

    Manuscript Type: Poster

    The FaceBase Management and Coordination Hub: Development and Design Principles for a Translational BioInformatics Data Portal


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    Discovering Disease Associaciations by Integrating Electronic Health Records and Medical Literature

    • Antony Holmes

    Manuscript Type: Poster

    Discovering Disease Associaciations by Integrating Electronic Health Records and Medical Literature


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    Gene Signature identified by Tissue-Decomposition Predicts Response To Preoperative Chemotherapy

    • Yong Huang

    Manuscript Type: Poster

    Gene Signature identified by Tissue-Decomposition Predicts Response To Preoperative Chemotherapy


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    The PhenX Toolkit: Toward Data Interoperability for Genome Wide Association Studies

    • Wayne Huggins

    Manuscript Type: Poster

    The PhenX Toolkit: Toward Data Interoperability for Genome Wide Association Studies


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    Using Circulating Plasma Protein Biomarkers of Inflammation and Vascular Modeling to Detect Abdominal Aortic Aneurysm

    • Haruka Itakura

    Manuscript Type: Poster

    Using Circulating Plasma Protein Biomarkers of Inflammation and Vascular Modeling to Detect Abdominal Aortic Aneurysm


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    OAMiner: An Application of Hypothesis Discovery within the Osteoarthritis Domain

    • Stephen James

    Manuscript Type: Poster

    OAMiner: An Application of Hypothesis Discovery within the Osteoarthritis Domain


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    The Human Variome Project: A Network of Scientists and Tools Constructed with the Goal of Understanding and Treating Genetic Diseases

    • Ted Kalbfleisch

    Manuscript Type: Poster

    The Human Variome Project: A Network of Scientists and Tools Constructed with the Goal of Understanding and Treating Genetic Diseases


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    Annotation of disease-associated SNPs with eQTLs to elucidate mechanisms of disease

    • H. Peter Kang

    Manuscript Type: Poster

    Annotation of disease-associated SNPs with eQTLs to elucidate mechanisms of disease


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    Clustering of Human Diseases and Genetic and Environmental Factors

    • Chad Kimmel

    Manuscript Type: Poster

    Clustering of Human Diseases and Genetic and Environmental Factors


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    Understanding variable representation for causal inference in EHRs

    • Samantha Kleinberg

    Manuscript Type: Poster

    Understanding variable representation for causal inference in EHRs


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    International, Interoperable, Harmonized Systems for Integrating Multi-omic Data Sources to Characterize and Quantify Metabolic and Nutritional Phenotypes

    • Matthew Lange

    Manuscript Type: Poster

    International, Interoperable, Harmonized Systems for Integrating Multi-omic Data Sources to Characterize and Quantify Metabolic and Nutritional Phenotypes


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    Semantic Web Methodologies Provide Access to FLU Data Without Getting You Sick of Searching

    • Timothy Lebo

    Manuscript Type: Poster

    Semantic Web Methodologies Provide Access to FLU Data Without Getting You Sick of Searching


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    Capturing Structured Gene Variant Data using GVF, XML and HL7

    • Sanghoon Lee

    Manuscript Type: Poster

    Capturing Structured Gene Variant Data using GVF, XML and HL7


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    Novel method for identification of chromosomal gain loci from conventional gene expression arrays

    • Younghee Lee

    Manuscript Type: Poster

    Novel method for identification of chromosomal gain loci from conventional gene expression arrays


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    Uncovering genes associated with human infections in pathogenic bacteria: a novel integrative analysis linking genome, bibliome, and diseasome

    • Frank Lin

    Manuscript Type: Poster

    Uncovering genes associated with human infections in pathogenic bacteria: a novel integrative analysis linking genome, bibliome, and diseasome


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    Stratification of Osteoarthritis Patients by Molecular Profiling Analysis of Synovium Tissue

    • Hao Liu

    Manuscript Type: Poster

    Stratification of Osteoarthritis Patients by Molecular Profiling Analysis of Synovium Tissue


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    Predicting Colorectal Cancer Patients' Survivability: The Comparison of Using Three Data Mining Methods- Artificial Neural Network, Logistic Regression and Decision Tree

    • Hsiu-Lin Liu

    Manuscript Type: Poster

    Predicting Colorectal Cancer Patients' Survivability: The Comparison of Using Three Data Mining Methods- Artificial Neural Network, Logistic Regression and Decision Tree


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    The University of California at Santa Cruz- University of California at San Francisco Prostate Cancer Genomics Browser

    • Jeffrey Long

    Manuscript Type: Poster

    The University of California at Santa Cruz- University of California at San Francisco Prostate Cancer Genomics Browser


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    Revealing signaling modules in cancers by mining TCGA data with integrated data-mining and knowledge-mining

    • Songjian Lu

    Manuscript Type: Poster

    Revealing signaling modules in cancers by mining TCGA data with integrated data-mining and knowledge-mining


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    Institutional Architecture for Secondary Data Use

    • Aenoch Lynn

    Manuscript Type: Poster

    Institutional Architecture for Secondary Data Use


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    Translational Informatics To Link Gene Activity To Ontologies With And Without Context

    • Kshitij Marwah

    Manuscript Type: Poster

    Translational Informatics To Link Gene Activity To Ontologies With And Without Context


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    Conceptual Models for Interoperability in caBIG Using the Semantic Web

    • James McCusker

    Manuscript Type: Poster

    Conceptual Models for Interoperability in caBIG Using the Semantic Web


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    A Practical Approach to Automated OWL Annotation

    • Shamim A. Mollah

    Manuscript Type: Poster

    A Practical Approach to Automated OWL Annotation


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    Linking Model Organisms and Resources to Human Diseases using an Ontology-based Approach

    • Christopher Mungall

    Manuscript Type: Poster

    Linking Model Organisms and Resources to Human Diseases using an Ontology-based Approach


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    Imaging Genetics: Replication of APOE, PICALM, and BIN1 Associations with Alzheimer Disease

    • Kwangsik Nho

    Manuscript Type: Poster

    Imaging Genetics: Replication of APOE, PICALM, and BIN1 Associations with Alzheimer Disease


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    Acquiring Biomedical Ontologies from Spreadsheets

    • Martin O'Connor

    Manuscript Type: Poster

    Acquiring Biomedical Ontologies from Spreadsheets


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    Extending i2b2 for Cancer Research: Adding Episode and Somatic Mutations

    • John Orechia

    Manuscript Type: Poster

    Extending i2b2 for Cancer Research: Adding Episode and Somatic Mutations


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    Supporting Disease Ontology Refinement and Query Accuracy through a Cohort Identification Interface

    • John Osborne

    Manuscript Type: Poster

    Supporting Disease Ontology Refinement and Query Accuracy through a Cohort Identification Interface


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    Using Density Estimates to Aggregate Patients and Summarize Disease Evolution

    • Adler Perotte

    Manuscript Type: Poster

    Using Density Estimates to Aggregate Patients and Summarize Disease Evolution


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    Informatics System with Imaging and Touchscreen Devices for Duchenne Muscular Dystrophy Multicenter Clinical Trial

    • Narayan Raum

    Manuscript Type: Poster

    Informatics System with Imaging and Touchscreen Devices for Duchenne Muscular Dystrophy Multicenter Clinical Trial


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    Use of Supervised and Unsupervised Machine Learning Algorithms to Identify Subtypes in Subjects with Post Traumatic Stress Disorder

    • Jessica Ross

    Manuscript Type: Poster

    Use of Supervised and Unsupervised Machine Learning Algorithms to Identify Subtypes in Subjects with Post Traumatic Stress Disorder


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    Translating Ethnopharmacological Findings into Novel Drug Leads: the Potential Roles of Linked Open Data and Ontologies

    • Matthias Samwald

    Manuscript Type: Poster

    Translating Ethnopharmacological Findings into Novel Drug Leads: the Potential Roles of Linked Open Data and Ontologies


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    Using Ontologies to Integrate Phenotype Measurement Values for Multiple Disease Models

    • Mary Shimoyama

    Manuscript Type: Poster

    Using Ontologies to Integrate Phenotype Measurement Values for Multiple Disease Models


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    Sigmoid Weighted ReliefF (SWRF) for Ranking SNPs

    • Matt Stokes

    Manuscript Type: Poster

    Sigmoid Weighted ReliefF (SWRF) for Ranking SNPs


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    Genome-wide Association Study of Personality Disorder in Adults with Attention-Deficit Hyperactivity Disorder

    • Lisa Sugerman

    Manuscript Type: Poster

    Genome-wide Association Study of Personality Disorder in Adults with Attention-Deficit Hyperactivity Disorder


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    ACCF/AHA Key Data Elements and Definitions of a Base Cardiovascular Vocabulary for Electronic Health Records

    • James Tcheng

    Manuscript Type: Poster

    ACCF/AHA Key Data Elements and Definitions of a Base Cardiovascular Vocabulary for Electronic Health Records


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    Activities of the Sage Bionetworks Working Group on Data Standards and Annotations

    • Jessica Tenenbaum

    Manuscript Type: Poster

    Activities of the Sage Bionetworks Working Group on Data Standards and Annotations


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    VIVO: Support for Translational Research

    • Michele Tennant

    Manuscript Type: Poster

    VIVO: Support for Translational Research


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    Distributed Infrastructure for Biomolecular Simulation-Derived Data Sharing and Analysis

    • Julien C. Thibault

    Manuscript Type: Poster

    Distributed Infrastructure for Biomolecular Simulation-Derived Data Sharing and Analysis


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    The Regulation of Smoking on Airway Epithelial Gene Expression and a Detection Model for Smoking History

    • Chih-Hao Tseng

    Manuscript Type: Poster

    The Regulation of Smoking on Airway Epithelial Gene Expression and a Detection Model for Smoking History


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    Biositemaps: A Framework for Biomedical Resource Discovery

    • Patricia Whetzel

    Manuscript Type: Poster

    Biositemaps: A Framework for Biomedical Resource Discovery


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    Using OpenSocial to Build a Shareable Library of Research Applications

    • Leslie Yuan

    Manuscript Type: Poster

    Using OpenSocial to Build a Shareable Library of Research Applications


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    Integrative analysis identifies a novel regulator of colorectal cancer invasion

    • Bing Zhang

    Manuscript Type: Poster

    Integrative analysis identifies a novel regulator of colorectal cancer invasion


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    Computational Discovery of Dual-Function Biomarkers in Proteomics

    • Fan Zhang

    Manuscript Type: Poster

    Computational Discovery of Dual-Function Biomarkers in Proteomics


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    Genetic Risk-variants Target FoxA1 Genomic Activity

    • Xiaoyang Zhang

    Manuscript Type: Poster

    Genetic Risk-variants Target FoxA1 Genomic Activity


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