A single link to the first track to allow the export script to build the search page
  • Tutorials/Working Group Pre-symposia
  • Scientific Sessions

    The Use of Cytogenetic Data to Enable Drug Repurposing Studies

    • Zach Abrams $lastName ;
    • Philip Payne $lastName

    The Use of Cytogenetic Data to Enable Drug Repurposing Studies


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    DNA Methylation Data Analysis with SPIRIT-ML

    • Srisairam Achuthan $lastName ;
    • Kelsang Donyo $lastName ;
    • Zhuo Chen $lastName ;
    • Rama Natarajan $lastName ;
    • Joyce C. Niland $lastName ;
    • Ajay Shah $lastName

    DNA Methylation Data Analysis with SPIRIT-ML


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    Assessing the plausibility of drug interactions signals learned from the EHR

    • Juan Banda $lastName ;
    • Howard R. Strasberg $lastName ;
    • Nigam Shah $lastName

    Assessing the plausibility of drug interactions signals learned from the EHR


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    Identification of zoonotic disease clusters by integrating phylogeography

    • Rachel Beard $lastName ;
    • Matthew Scotch $lastName

    Identification of zoonotic disease clusters by integrating phylogeography


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    Quantifying Geo-imputation error: Using Gaussian Geostatistical Simulation (GGS) to Dis-aggregate Zip Code Data & Estimate Positional Error.

    • Jess Behrens $lastName ;
    • Adam Pah $lastName ;
    • Abel N. Kho $lastName

    Quantifying Geo-imputation error: Using Gaussian Geostatistical Simulation (GGS) to Dis-aggregate Zip Code Data & Estimate Positional Error.


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    Inter-Network Cluster Replication: A Case Study in Co-Occurring Comorbidities

    • Suresh K. Bhavnani $lastName ;
    • Bryant Dang $lastName ;
    • Shyam Visweswaran $lastName ;
    • Rohit Divekar $lastName

    Inter-Network Cluster Replication: A Case Study in Co-Occurring Comorbidities


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    Computational Phenotyping from Electronic Health Records across National Networks

    • Joshua C. Denny $lastName ;
    • Jimeng Sun $lastName ;
    • Abel N. Kho $lastName ;
    • Jyotishman Pathak $lastName ;
    • Rachel Richesson $lastName

    Computational Phenotyping from Electronic Health Records across National Networks


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    Development of Standardized Common Data Elements for Biobanking of Human Biospecimens

    • helena ellis $lastName

    Development of Standardized Common Data Elements for Biobanking of Human Biospecimens


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    GenePool: A Cloud-Based Platform for Interactive Visualization and Integrative Analysis of Genomics and Clinical Data

    • Hua Fan-Minogue $lastName ;
    • Marina Sirota $lastName ;
    • Sandeep Sanga $lastName ;
    • Dexter Hadley $lastName ;
    • Atul J. Butte $lastName ;
    • Tod M. Klingler $lastName

    GenePool: A Cloud-Based Platform for Interactive Visualization and Integrative Analysis of Genomics and Clinical Data


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    Search Tag Analyze Resource (STAR): An online platform to crowd-source genomic disease signatures from open digital samples.

    • Dexter Hadley $lastName ;
    • James Pan $lastName ;
    • Marina Sirota $lastName ;
    • Bin Chen $lastName ;
    • Boris Oskotsky $lastName ;
    • Raymond K. Auerbach $lastName ;
    • Alexander Morgan $lastName ;
    • Benjamin A. Pinsky $lastName ;
    • Atul J. Butte $lastName

    Search Tag Analyze Resource (STAR): An online platform to crowd-source genomic disease signatures from open digital samples.


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    A systems biology approach to genome-environment interactions using zebrafish (Danio rerio).

    • Gary T. Hardiman $lastName

    A systems biology approach to genome-environment interactions using zebrafish (Danio rerio).


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    Partial integration strategy of heterogeneous datasets to prognosticate survival in glioblastoma

    • Haruka Itakura $lastName ;
    • Olivier Gevaert $lastName

    Partial integration strategy of heterogeneous datasets to prognosticate survival in glioblastoma


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    Network-Based Models of Context-Specific Synthetic Lethality

    • Alexandra Jacunski $lastName ;
    • Nicholas P. Tatonetti $lastName

    Network-Based Models of Context-Specific Synthetic Lethality


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    Identifying Candidate Ataxin-2 Inhibitors in High-Throughput Screening Data Using Molecular Descriptors

    • David E. Jones $lastName ;
    • Jingran Wen $lastName ;
    • Daniel R. Scoles $lastName ;
    • Thomas Dexheimer $lastName ;
    • Hongmao Sun $lastName ;
    • David Maloney $lastName ;
    • Anton Simeonov $lastName ;
    • Ajit Jadhav $lastName ;
    • Stefan M. Pulst $lastName ;
    • Julio C. Facelli $lastName

    Identifying Candidate Ataxin-2 Inhibitors in High-Throughput Screening Data Using Molecular Descriptors


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    A Risk Model for 30-Day Heart Failure Re-Admission using Electronic Medical Records

    • Uri Kartoun $lastName ;
    • Stanley Shaw $lastName

    A Risk Model for 30-Day Heart Failure Re-Admission using Electronic Medical Records


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    A Risk Model for 30-Day Heart Failure Re-Admission using Electronic Medical Records


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    A Toolkit Enabling Efficient, Repeatable Phenotype Algorithm Development and Sharing

    • Jacqueline Kirby $lastName ;
    • Luke Rasmussen $lastName ;
    • Peter Speltz $lastName ;
    • Jyotishman Pathak $lastName ;
    • Jennifer A. Pacheco $lastName ;
    • William Thompson $lastName ;
    • James Cowan $lastName ;
    • Susan Osgood $lastName ;
    • Lisa Bastarache $lastName ;
    • Peggy L. Peissig $lastName ;
    • Sarah Stallings $lastName ;
    • Paul Harris $lastName ;
    • Melissa Basford $lastName ;
    • Joshua C. Denny $lastName

    A Toolkit Enabling Efficient, Repeatable Phenotype Algorithm Development and Sharing


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    A Toolkit Enabling Efficient, Repeatable Phenotype Algorithm Development and Sharing


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    NLP-TAB: A system for integration and visualization of diverse biomedical NLP applications

    • Benjamin C. Knoll $lastName ;
    • Genevieve B. Melton $lastName ;
    • Hongfang Liu $lastName ;
    • Hua Xu $lastName ;
    • Serguei V. Pakhomov $lastName

    NLP-TAB: A system for integration and visualization of diverse biomedical NLP applications


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    Brain Injury Cognitive Screening (BICS): A simple, quicka dn effective application for screening mild traumatic brain injury

    • Jitendra Kumar $lastName ;
    • Suresh Kumar $lastName ;
    • Pooja Shah $lastName ;
    • Ajay Jawahar $lastName

    Brain Injury Cognitive Screening (BICS): A simple, quicka dn effective application for screening mild traumatic brain injury


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    Constructing a UIMA-based High-performance Temporal Link Detection Pipeline with Rich Features

    • Dingcheng Li $lastName ;
    • Guoxi Yan $lastName ;
    • Ravikumar Komandur Elayavilli $lastName ;
    • Majid Rastegar-Mojarad $lastName ;
    • Yanpeng Li $lastName ;
    • Kavishwar Wagholikar $lastName ;
    • Sungwan Sohn $lastName ;
    • Hongfang Liu $lastName

    Constructing a UIMA-based High-performance Temporal Link Detection Pipeline with Rich Features


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    DNA Palindromes in Human Genome

    • Helen Li $lastName ;
    • Aman Gupta $lastName ;
    • Madhavi Ganapathiraju $lastName

    DNA Palindromes in Human Genome


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    Novel Application of Junction Trees to the Interpretation of Epigenetic Differences among Lung Cancer Subtypes

    • Arturo Lopez Pineda $lastName ;
    • Vanathi Gopalakrishnan $lastName

    Novel Application of Junction Trees to the Interpretation of Epigenetic Differences among Lung Cancer Subtypes


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    Improving Drug Safety Surveillance Using Chemical Systems Biology: Modular Assembly of Drug Safety Subnetworks

    • Tal Lorberbaum $lastName ;
    • Mavra Nasir $lastName ;
    • Michael J. Keiser $lastName ;
    • Santiago Vilar $lastName ;
    • George Hripcsak $lastName ;
    • Nicholas P. Tatonetti $lastName

    Improving Drug Safety Surveillance Using Chemical Systems Biology: Modular Assembly of Drug Safety Subnetworks


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    The AEExplorer, Its Developments and Applications in Clinical Trials, Especially for Investigating the Effects of Concomitant Proton Pump Inhibitors (PPIs) in Osteoporosis Clinical Trials

    • Zhongjun Luo $lastName ;
    • Jing Yang $lastName ;
    • Zheng Zuo $lastName ;
    • Nancy Xu $lastName ;
    • Marcea Whitaker $lastName ;
    • Ram Tiwari $lastName ;
    • Lan Huang $lastName ;
    • Zongwei Luo $lastName ;
    • Charles Cooper $lastName ;
    • Weida Tong $lastName ;
    • Lilliam Rosario $lastName ;
    • Eileen E Navarro Almario $lastName ;
    • ShaAvhree Buckman-Garner $lastName

    The AEExplorer, Its Developments and Applications in Clinical Trials, Especially for Investigating the Effects of Concomitant Proton Pump Inhibitors (PPIs) in Osteoporosis Clinical Trials


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    Conceptualizing a Novel Quasi-Continuous Bayesian Phylogeographic Framework for Spatiotemporal Hypothesis Testing

    • Daniel J. Magee $lastName ;
    • Matthew Scotch $lastName

    Conceptualizing a Novel Quasi-Continuous Bayesian Phylogeographic Framework for Spatiotemporal Hypothesis Testing


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    Use of the OMOP Common Data Model within the PCORI CDRN Initiative: Data Harmonization and Integration with PCORNet CDM

    • Micheal Matheny $lastName ;
    • Daniella Meeker $lastName ;
    • Michael G. Kahn $lastName ;
    • Rimma Belenkaya $lastName ;
    • Lewis J. Frey $lastName ;
    • Patrick Ryan $lastName

    Use of the OMOP Common Data Model within the PCORI CDRN Initiative: Data Harmonization and Integration with PCORNet CDM


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    Informing the Hunt for Rare Disease Causal Variants: The International Mouse Phenotyping Consortium

    • Terrence F. Meehan $lastName

    Informing the Hunt for Rare Disease Causal Variants: The International Mouse Phenotyping Consortium


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    Weighting of Sensitivity and Specificity Estimates to Obtain Unbiased Performance Estimates for Classifiers using Stratified Test Sets

    • Douglas Morrison $lastName ;
    • Tina Hernandez-Boussard $lastName

    Weighting of Sensitivity and Specificity Estimates to Obtain Unbiased Performance Estimates for Classifiers using Stratified Test Sets


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    Filtering Negative Reports for a Comparative Effectiveness Study of Stroke

    • Danielle L. Mowery $lastName ;
    • Brett R. South $lastName ;
    • Erin Madden $lastName ;
    • Salomeh Keyhani $lastName ;
    • Brian E. Chapman $lastName ;
    • Wendy Chapman $lastName

    Filtering Negative Reports for a Comparative Effectiveness Study of Stroke


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    An Approach for Partial Automation of Next Generation Sequencing Trio Analysis

    • Amanda J. Murphy $lastName

    An Approach for Partial Automation of Next Generation Sequencing Trio Analysis


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    Mining Electronic Health Records using Linked Data

    • David J. Odgers $lastName ;
    • Michel Dumontier $lastName

    Mining Electronic Health Records using Linked Data


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    Cancer Registry Control Panel (CRCP): A System for the Discovery of Patient Cancer Status using the EMR

    • John D. Osborne $lastName ;
    • Matthew C. Wyatt $lastName ;
    • Andrew Westfall $lastName ;
    • James Willig $lastName ;
    • Geoff Gordon $lastName

    Cancer Registry Control Panel (CRCP): A System for the Discovery of Patient Cancer Status using the EMR


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    Concept Modeling-based Drug Repositioning

    • Jagadeesh Patchala $lastName ;
    • Anil G. Jegga $lastName

    Concept Modeling-based Drug Repositioning


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    Automating i2b2 Ontology Mappings with MetaMap

    • Lori Phillips $lastName ;
    • Shawn N. Murphy $lastName

    Automating i2b2 Ontology Mappings with MetaMap


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    A prototype software pipeline to identify mutated genes that have a similar effect on tumor transcription

    • Stephen R. Piccolo $lastName

    A prototype software pipeline to identify mutated genes that have a similar effect on tumor transcription


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    Biocuration of chemopredictive markers and direct drug targets from public data to determine associated targeted therapy benefit and clinical outcomes

    • Shruti Rao $lastName ;
    • Shahla Riazi $lastName ;
    • Simina M. Boca $lastName ;
    • Varun Singh $lastName ;
    • Michael Harris $lastName ;
    • Peter McGarvey $lastName ;
    • Michael J. Pishvaian $lastName ;
    • Jonathan Brody $lastName ;
    • Subha Madhavan $lastName

    Biocuration of chemopredictive markers and direct drug targets from public data to determine associated targeted therapy benefit and clinical outcomes


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    Definition and Application of Phenotype Design Patterns

    • Luke Rasmussen $lastName ;
    • William Thompson $lastName ;
    • Jennifer A. Pacheco $lastName ;
    • Abel N. Kho $lastName ;
    • David S. Carrell $lastName ;
    • Jyotishman Pathak $lastName ;
    • Peggy L. Peissig $lastName ;
    • Gerard Tromp $lastName ;
    • Joshua C. Denny $lastName ;
    • Justin Starren $lastName

    Definition and Application of Phenotype Design Patterns


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    RED-i Data Integrator for REDCap Projects

    • Erik C. Schmidt $lastName ;
    • Kevin Hanson $lastName ;
    • Christopher P. Barnes $lastName ;
    • Josh Hanna $lastName ;
    • William Hogan $lastName

    RED-i Data Integrator for REDCap Projects


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    Analysis of Viral Genetics for Estimating Diffusion of Influenza A H6N1

    • Matthew Scotch $lastName ;
    • Marc A. Suchard $lastName ;
    • Peter M. Rabinowitz $lastName

    Analysis of Viral Genetics for Estimating Diffusion of Influenza A H6N1


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    Detecting Cancer Pathway Crosstalk with Distance Correlation

    • Michael Sharpnack $lastName ;
    • Kun Huang $lastName

    Detecting Cancer Pathway Crosstalk with Distance Correlation


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    A Comprehensive Time-Course-Based Meta-Analysis of Sepsis and Sterile Inflammation Reveals a Robust Diagnostic Gene Set

    • Timothy E. Sweeney $lastName ;
    • Aaditya Shidham $lastName ;
    • Hector Wong $lastName ;
    • Purvesh Khatri $lastName

    A Comprehensive Time-Course-Based Meta-Analysis of Sepsis and Sterile Inflammation Reveals a Robust Diagnostic Gene Set


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    Data-integration and information propagation for drug discovery in triple negative breast cancer: a network-based approach

    • Francesca Vitali $lastName ;
    • Laurie Cohen $lastName ;
    • Francesca Mulas $lastName ;
    • Alberto Zambelli $lastName ;
    • Riccardo Bellazzi $lastName

    Data-integration and information propagation for drug discovery in triple negative breast cancer: a network-based approach


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    Adverse Drug Events-based Tumor Stratification for Ovarian Cancer Patients Receiving Platinum Therapy

    • Chen Wang $lastName ;
    • Michael T. Zimmermann $lastName ;
    • Christopher Chute $lastName ;
    • Guoqian Jiang $lastName

    Adverse Drug Events-based Tumor Stratification for Ovarian Cancer Patients Receiving Platinum Therapy


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    Ranking Medical Subject Headings using a factor graph model

    • Wei Wei $lastName ;
    • Dina Demner-Fushman $lastName ;
    • Shuang Wang $lastName ;
    • Xiaoqian Jiang $lastName ;
    • Lucila Ohno-Machado $lastName

    Ranking Medical Subject Headings using a factor graph model


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    An Inter-Patient Heterogeneity Model for Biomarker Discovery Studies

    • Michelle Winerip $lastName ;
    • Garrick Wallstrom $lastName

    An Inter-Patient Heterogeneity Model for Biomarker Discovery Studies


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    A knowledge-based, automated method for phenotyping in the EHR using only clinical pathology reports

    • Alexandre Yahi $lastName ;
    • Nicholas P. Tatonetti $lastName

    A knowledge-based, automated method for phenotyping in the EHR using only clinical pathology reports


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    Predicting Papillary Thyroid Carcinoma Patient Outcomes through Gene Expression Data

    • Kun-Hsing Yu $lastName ;
    • Wei Wang $lastName ;
    • Chung-Yu Wang $lastName ;
    • Michael Snyder $lastName

    Predicting Papillary Thyroid Carcinoma Patient Outcomes through Gene Expression Data


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    Mining Biomedical Literature to Explore Interactions between Cancer Drugs and Dietary Supplement

    • Rui Zhang $lastName ;
    • Terrence J. Adam $lastName ;
    • Gyorgy Simon $lastName ;
    • Michael J. Cairelli $lastName ;
    • Thomas Rindflesch $lastName ;
    • Serguei Pakhomov $lastName ;
    • Genevieve B. Melton $lastName

    Mining Biomedical Literature to Explore Interactions between Cancer Drugs and Dietary Supplement


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    Secure Genomic Computation through Site-Wise Encryption

    • Yongan Zhao $lastName ;
    • Xiaofeng Wang $lastName ;
    • Haixu Tang $lastName

    Secure Genomic Computation through Site-Wise Encryption


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    Identifying Cancer Driver Mutations and Genes from Next-generation Sequencing Data

    • Zhongming Zhao $lastName ;
    • Peilin Jia $lastName ;
    • Junfeng Xia $lastName

    Identifying Cancer Driver Mutations and Genes from Next-generation Sequencing Data


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    SPIRIT-NLP: A Natural Language Processing (NLP) Platform for Computable Protocol

    • Weizhong Zhu $lastName ;
    • Ajay Shah $lastName

    SPIRIT-NLP: A Natural Language Processing (NLP) Platform for Computable Protocol


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