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  • Papers

    Predicting hospital visits from geo-tagged Internet search logs

    • Vibhu Agarwal ;
    • Lichy Han ;
    • Isaac Madan ;
    • Shaurya Saluja ;
    • Aaditya Shidham ;
    • Nigam Shah

    Predicting hospital visits from geo-tagged Internet search logs


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    Predicting hospital visits from geo-tagged Internet search logs


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    Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL

    • Anca Bucur ;
    • Jasper V. van Leeuwen $lastName ;
    • Njin-Zu Chen ;
    • David Perez-Rey ;
    • Raul Alonso-Calvo ;
    • Sergio Paraiso-Medina ;
    • Brecht Claerhout ;
    • Kristof de Schepper ;
    • Keyur Mehta ;
    • Cyril Krykwinski

    Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL


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    Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL


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    Drug-drug Interaction Profiles of Medication Regimens Extracted from a De-identified Electronic Medical Records System

    • Mariusz Butkiewicz ;
    • Nicole A. Restrepo ;
    • Jonathan Haines ;
    • Dana C. Crawford

    Drug-drug Interaction Profiles of Medication Regimens Extracted from a De-identified Electronic Medical Records System


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    Drug-drug Interaction Profiles of Medication Regimens Extracted from a De-identified Electronic Medical Records System


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    Learning Low-Dimensional Representations of Medical Concepts

    • Youngduck Choi ;
    • Chill Yi-I Chiu ;
    • David Sontag

    Learning Low-Dimensional Representations of Medical Concepts


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    Learning Low-Dimensional Representations of Medical Concepts


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    Cross Border Semantic Interoperability for Clinical Research: the EHR4CR Semantic Resources and Services

    • Christel Daniel ;
    • David Ouagne ;
    • Eric Sadou ;
    • Kerstin Forsberg ;
    • Mark McGilchrist ;
    • Eric Zapletal ;
    • Nicolas Paris ;
    • Sajjad Hussain ;
    • Marie-Christine Jaulent ;
    • Dipak Kalra

    Cross Border Semantic Interoperability for Clinical Research: the EHR4CR Semantic Resources and Services


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    Cross Border Semantic Interoperability for Clinical Research: the EHR4CR Semantic Resources and Services


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    Applying a Participatory Design Approach to Define Objectives and Properties of a “Data Profiling” Tool for Electronic Health Data

    • Hossein Estiri ;
    • Terri L. Lovins ;
    • Nader Afzalan ;
    • Kari A. Stephens

    Applying a Participatory Design Approach to Define Objectives and Properties of a “Data Profiling” Tool for Electronic Health Data


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    Applying a Participatory Design Approach to Define Objectives and Properties of a “Data Profiling” Tool for Electronic Health Data


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    Automated Summarization of Publications Associated with Adverse Drug Reactions from PubMed

    • Joseph Finkelstein ;
    • Qinlang Chen ;
    • Hayden Adams ;
    • Carol Friedman

    Automated Summarization of Publications Associated with Adverse Drug Reactions from PubMed


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    Automated Summarization of Publications Associated with Adverse Drug Reactions from PubMed


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    Inferring the Interactions of Risk Factors from EHRs

    • Travis R. Goodwin ;
    • Sanda M. Harabagiu

    Inferring the Interactions of Risk Factors from EHRs


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    A Quantitative and Qualitative Evaluation of Sentence Boundary Detection for the Clinical Domain

    • Denis R. Griffis ;
    • Chaitanya Shivade ;
    • Eric Fosler-Lussier ;
    • Albert M. Lai

    A Quantitative and Qualitative Evaluation of Sentence Boundary Detection for the Clinical Domain


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    A Quantitative and Qualitative Evaluation of Sentence Boundary Detection for the Clinical Domain


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    i2b2t2: Unlocking Visualization for Clinical Research

    • Daniel R. Harris ;
    • Darren Henderson

    i2b2t2: Unlocking Visualization for Clinical Research


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    i2b2t2: Unlocking Visualization for Clinical Research


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    The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight

    • Mark L. Homer ;
    • Nathan Palmer ;
    • Olivier Bodenreider ;
    • Aurel Cami ;
    • Laura Chadwick ;
    • Kenneth Mandl

    The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight


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    The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight


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    My Cancer Genome: Evaluating an Educational Model to Introduce Patients and Caregivers to Precision Medicine Information

    • Sheila Kusnoor ;
    • Taneya Koonce ;
    • Mia Levy ;
    • Christine Lovly ;
    • Helen Naylor ;
    • Ingrid Anderson ;
    • Christine Micheel ;
    • Sheau-Chiann Chen ;
    • Fei Ye ;
    • Nunzia Giuse

    My Cancer Genome: Evaluating an Educational Model to Introduce Patients and Caregivers to Precision Medicine Information


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    My Cancer Genome: Evaluating an Educational Model to Introduce Patients and Caregivers to Precision Medicine Information


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    On the Privacy Risks of Sharing Clinical Proteomics Data

    • Sujun Li ;
    • Nuno Bandeira ;
    • Xiaofeng Wang ;
    • Haixu Tang

    On the Privacy Risks of Sharing Clinical Proteomics Data


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    On the Privacy Risks of Sharing Clinical Proteomics Data


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    Semantic Web Ontology and Data Integration: a Case Study in Aiding Psychiatric Drug Repurposing

    • Chen Liang ;
    • Jingchun Sun ;
    • Cui Tao

    Semantic Web Ontology and Data Integration: a Case Study in Aiding Psychiatric Drug Repurposing


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    Semantic Web Ontology and Data Integration: a Case Study in Aiding Psychiatric Drug Repurposing


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    An Automated System for Retrieving Herb-drug Interaction Related Articles from MEDLINE

    • Kuo Lin ;
    • Carol Friedman ;
    • Joseph Finkelstein

    An Automated System for Retrieving Herb-drug Interaction Related Articles from MEDLINE


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    An Automated System for Retrieving Herb-drug Interaction Related Articles from MEDLINE


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    NLP-PIER: A Scalable Natural Language Processing, Indexing, and Searching Architecture for Clinical Notes

    • Reed McEwan ;
    • Genevieve B. Melton ;
    • Benjamin C. Knoll ;
    • Yan Wang ;
    • Gretchen Hultman ;
    • Justin L. Dale ;
    • Tim Meyer ;
    • Serguei V. Pakhomov

    NLP-PIER: A Scalable Natural Language Processing, Indexing, and Searching Architecture for Clinical Notes


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    NLP-PIER: A Scalable Natural Language Processing, Indexing, and Searching Architecture for Clinical Notes


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    Exploring Gaps of Family History Documentation in EHR for Precision Medicine - A Case Study of Familial Hypercholesterolemia Ascertainment

    • Saeed Mehrabi ;
    • Yanshan Wang ;
    • Donna Ihrke ;
    • Hongfang Liu

    Exploring Gaps of Family History Documentation in EHR for Precision Medicine - A Case Study of Familial Hypercholesterolemia Ascertainment


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    Exploring Gaps of Family History Documentation in EHR for Precision Medicine - A Case Study of Familial Hypercholesterolemia Ascertainment


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    A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform

    • Huan Mo ;
    • Guoqian Jiang ;
    • Jennifer A. Pacheco ;
    • Richard C. Kiefer ;
    • Luke Rasmussen ;
    • Jyotishman Pathak ;
    • Joshua C. Denny ;
    • William Thompson

    A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform


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    A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform


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    Using LASSO Regression to Predict Rheumatoid Arthritis Treatment Efficacy

    • David J. Odgers ;
    • Natalie Telis ;
    • Heather Hall ;
    • Michel Dumontier

    Using LASSO Regression to Predict Rheumatoid Arthritis Treatment Efficacy


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    Using LASSO Regression to Predict Rheumatoid Arthritis Treatment Efficacy


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    Metadata-driven Clinical Data Loading into i2b2 for Clinical and Translational Science Institutes

    • Andrew R. Post ;
    • Akshatha K. Pai ;
    • Richard Willard ;
    • Bradley J. May ;
    • Andrew C. West ;
    • Sanjay Agravat ;
    • Stephen J. Granite ;
    • Raimond L. Winslow ;
    • David Stephens

    Metadata-driven Clinical Data Loading into i2b2 for Clinical and Translational Science Institutes


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    Metadata-driven Clinical Data Loading into i2b2 for Clinical and Translational Science Institutes


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    A Data Mining Approach to Determine Sepsis Guideline Impact on Inpatient Mortality and Complications

    • Lisiane Pruinelli ;
    • Pranjul Yadav ;
    • Andrew Hangsleben ;
    • Jakob Johnson ;
    • Sanjoy Dey ;
    • Maribet McCarty ;
    • Vipin Kumar ;
    • Connie W. Delaney ;
    • Michael Steinbach ;
    • Bonnie L. Westra ;
    • Gyorgy Simon

    A Data Mining Approach to Determine Sepsis Guideline Impact on Inpatient Mortality and Complications


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    A Data Mining Approach to Determine Sepsis Guideline Impact on Inpatient Mortality and Complications


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    Towards Evidence-Based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns

    • Kalpana Raja ;
    • Naman Dasot ;
    • Pawan Goyal ;
    • Siddhartha R. Jonnalagadda

    Towards Evidence-Based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns


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    Regular Expression-based Learning for METs Value Extraction

    • Douglas Redd ;
    • Jinqiu Kuang ;
    • April F. Mohanty ;
    • Bruce Bray ;
    • Qing Zeng-Treitler

    Regular Expression-based Learning for METs Value Extraction


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    Regular Expression-based Learning for METs Value Extraction


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    Searching in the Dark: Phenotyping Diabetic Retinopathy in a De-Identified Electronic Medical Record Sample of African Americans

    • Nicole A. Restrepo ;
    • Eric Farber-Eger ;
    • Dana C. Crawford

    Searching in the Dark: Phenotyping Diabetic Retinopathy in a De-Identified Electronic Medical Record Sample of African Americans


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    Searching in the Dark: Phenotyping Diabetic Retinopathy in a De-Identified Electronic Medical Record Sample of African Americans


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    TRANSFoRm eHealth Solution for Quality of Life Monitoring

    • Stanislaw Saganowski ;
    • Andrzej Misiaszek ;
    • Piotr Brodka ;
    • Anna Andreasson ;
    • Vasa Curcin ;
    • Kazimierz Fraczkowski

    TRANSFoRm eHealth Solution for Quality of Life Monitoring


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    TRANSFoRm eHealth Solution for Quality of Life Monitoring


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    Test Case Selection in Pre-Deployment Testing of Complex Clinical Decision Support Systems

    • Geoffrey J. Tso ;
    • Kaeli Yuen ;
    • Susana Martins ;
    • Samson Tu ;
    • Michael Ashcraft ;
    • Paul Heidenreich ;
    • Brian Hoffman ;
    • Mary K. Goldstein

    Test Case Selection in Pre-Deployment Testing of Complex Clinical Decision Support Systems


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    Test Case Selection in Pre-Deployment Testing of Complex Clinical Decision Support Systems


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    Identifying Family History and Substance Use Associations for Adult Epilepsy from the Electronic Health Record

    • Yan Wang ;
    • Elizabeth S. Chen ;
    • Ilo Leppik ;
    • Serguei V. Pakhomov ;
    • Indra N. Sarkar ;
    • Genevieve B. Melton

    Identifying Family History and Substance Use Associations for Adult Epilepsy from the Electronic Health Record


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    Identifying Family History and Substance Use Associations for Adult Epilepsy from the Electronic Health Record


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    Expanding Interprofessional EHR Data in i2b2

    • Bonnie L. Westra ;
    • Beverly Christie ;
    • Steven G. Johnson ;
    • Lisiane Pruinelli ;
    • Anne LaFlamme ;
    • Jung In Park ;
    • Suzan G. Sherman ;
    • Piper Ranallo ;
    • Matthew D. Byrne ;
    • Stuart Speedie

    Expanding Interprofessional EHR Data in i2b2


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    Expanding Interprofessional EHR Data in i2b2


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    How Have Cancer Clinical Trial Eligibility Criteria Evolved Over Time?

    • Anil Yaman ;
    • Shreya Chakrabarti ;
    • Anando Sen ;
    • Chunhua Weng

    How Have Cancer Clinical Trial Eligibility Criteria Evolved Over Time?


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    How Have Cancer Clinical Trial Eligibility Criteria Evolved Over Time?


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    Research Reproducibility in Longitudinal Multi-Center Studies Using Data from Electronic Health Records

    • Meredith N. Zozus ;
    • Rachel Richesson ;
    • Anita Walden ;
    • Jessica D. Tenenbaum ;
    • William E. Hammond

    Research Reproducibility in Longitudinal Multi-Center Studies Using Data from Electronic Health Records


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