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  • Frontal

    • Poster

    Enabling pharmacogenomic decision support across seven European countries with diverse health IT infrastructures

    • Kathrin Blagec ;
    • Rudolf Koopmann ;
    • Mandy Crommentuijn–van Rhenen ;
    • Inge Holsappel ;
    • Cathelijne H. van der Wouden ;
    • Lidija Konta ;
    • Hong Xu ;
    • Daniela Steinberger ;
    • Enrico Just ;
    • Jesse J. Swen ;
    • Henk-Jan Guchelaar ;
    • Matthias Samwald

    Enabling pharmacogenomic decision support across seven European countries with diverse health IT infrastructures


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    A Natural Language Processing Pipeline for Capturing Prostate Cancer Patient-Centered Outcomes

    • Selen Bozkurt ;
    • Jung I. Park ;
    • Daniel Rubin ;
    • James D. Brooks ;
    • Tina Hernandez-Boussard

    A Natural Language Processing Pipeline for Capturing Prostate Cancer Patient-Centered Outcomes


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    Towards a Molecular Basis of Exposomic Research

    • Nicole Burnett ;
    • Ramkiran Gouripeddi ;
    • Mollie Cummins ;
    • Julio C. Facelli ;
    • Katherine A. Sward

    Towards a Molecular Basis of Exposomic Research


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    Multiple Sclerosis Lesion Change Detection Using Multi-Scale Radiomic Features of MRI Images

    • Myra Cheng ;
    • Alfiia Galimzianova ;
    • Ziga Lesjak ;
    • Ziga Spiclin ;
    • Christopher Lock ;
    • Daniel Rubin

    Multiple Sclerosis Lesion Change Detection Using Multi-Scale Radiomic Features of MRI Images


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    Training Biomedical Researchers to Effectively Collaborate with Data Scientists

    • Nicole Contaxis ;
    • Aisha Langford ;
    • Yindalon Aphinyanaphongs ;
    • Alisa Surkis

    Training Biomedical Researchers to Effectively Collaborate with Data Scientists


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    Analysis of Whole Exome Sequencing Data from Sickle Cell Disease Subjects: A Focus on Genomic Variants and Adverse Events

    • Erin L. Crowgey ;
    • Timothy Bunnell ;
    • Anders Kolb

    Analysis of Whole Exome Sequencing Data from Sickle Cell Disease Subjects: A Focus on Genomic Variants and Adverse Events


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    Sepsis Clinical Phenotyping with Medication Topic Modeling

    • Alison E. Fohner ;
    • John D. Greene ;
    • Jonathan H. Chen ;
    • Gabriel J. Escobar ;
    • Vincent X. Liu

    Sepsis Clinical Phenotyping with Medication Topic Modeling


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    mHealth Application for Individuals with Heart Failure: Design and Testing

    • Marva Foster

    mHealth Application for Individuals with Heart Failure: Design and Testing


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    Mining Sequential Patterns of Antidepressant Drug Changes from EHR Data

    • Kartikey Grover ;
    • Joseph DeFerio ;
    • Min-hyung Kim ;
    • Amit Sheth ;
    • Samprit Banerjee ;
    • Jyotishman Pathak

    Mining Sequential Patterns of Antidepressant Drug Changes from EHR Data


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    Coalitional game theory as a promising approach to identify candidate autism genes

    • Anika Gupta ;
    • Min Woo Sun ;
    • Kelley Paskov ;
    • Nate Stockham ;
    • Jae-Yoon Jung ;
    • Dennis Wall

    Coalitional game theory as a promising approach to identify candidate autism genes


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    The CTSA Program Center for Data to Health

    • Melissa A. Haendel ;
    • Kristi Holmes ;
    • Sean Mooney ;
    • Christopher G. Chute ;
    • Justin Guinney

    The CTSA Program Center for Data to Health


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    Phenome-Wide Associations of Homelessness in Electronic Health Records

    • Jared Hendrickson ;
    • Joshua C. Denny ;
    • Cosmin A. Bejan

    Phenome-Wide Associations of Homelessness in Electronic Health Records


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    Transcriptomic and Proteomic Analyses Revealed the Molecular Basis of Platinum Resistance in Ovarian Cancer Patients

    • Vincent Hu ;
    • Isaac S. Kohane ;
    • Kun-Hsing Yu

    Transcriptomic and Proteomic Analyses Revealed the Molecular Basis of Platinum Resistance in Ovarian Cancer Patients


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    A tool to study structural and functional features around coding variants

    • Brian Kang ;
    • G. W. Gant Luxton ;
    • Madhavi K. Ganapathiraju

    A tool to study structural and functional features around coding variants


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    A High-Explanatory Informatics Framework for Predicting Pathway Perturbations from Single Nucleotide Substitutions

    • Olha Kholod ;
    • Zainab Al-Taie ;
    • Nattapon Thanintorn ;
    • Kristen Taylor ;
    • Richard Hammer ;
    • Dmitriy Shin

    A High-Explanatory Informatics Framework for Predicting Pathway Perturbations from Single Nucleotide Substitutions


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    Evaluation of PrediXcan capabilities to predict gene expression levels and prioritize variant-based associations using datasets with varied population background

    • Binglan Li ;
    • Shefali S. Verma ;
    • Yogasudha Veturi ;
    • Anurag Verma ;
    • Yuki Bradford ;
    • david haas ;
    • Marylyn D. Ritchie

    Evaluation of PrediXcan capabilities to predict gene expression levels and prioritize variant-based associations using datasets with varied population background


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    pGenomicWalk – a open source tool to generate DNA Walk Diagram

    • Haiqing Li

    pGenomicWalk – a open source tool to generate DNA Walk Diagram


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    smartNLP – A real time Nature Language Processing(NLP) data analytic module in tranSMART

    • Haiqing Li ;
    • Yingyan Wu ;
    • Ningrong Ye ;
    • Hongzhi li ;
    • Susan Hmwe ;
    • Xiaoping Yi ;
    • Taihao Jin ;
    • xu zhang ;
    • Bihong T. Chen ;
    • Weizhong Zhu

    smartNLP – A real time Nature Language Processing(NLP) data analytic module in tranSMART


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    A Precision Medicine Approach To The Study Of Ventilator-Associated Lower Respiratory Tract Infections (VA-LRTI)

    • Guillermo H. Lopez Campos ;
    • Raquel Almansa Mora ;
    • Jesus F. Bermejo Martin ;
    • Ignacio Martin Loeches

    A Precision Medicine Approach To The Study Of Ventilator-Associated Lower Respiratory Tract Infections (VA-LRTI)


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    Analysis of Disease Enrichment in Exposome-related Data Resources

    • Guillermo H. Lopez Campos ;
    • Philip Kiossoglou ;
    • Jose A. A. Seoane ;
    • Fernando Martin-Sanchez

    Analysis of Disease Enrichment in Exposome-related Data Resources


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    Creating a usability framework for the NCI SEER Data Management System (SEER*DMS) to enhance population level cancer surveillance

    • Marina Matatova ;
    • Laura Lourenco ;
    • Paul Fearn

    Creating a usability framework for the NCI SEER Data Management System (SEER*DMS) to enhance population level cancer surveillance


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    Genomics for i2b2: Two Strategies

    • Lori C. Phillips ;
    • Alyssa P. Goodson ;
    • Shawn N. Murphy

    Genomics for i2b2: Two Strategies


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    Extracting Diseases Co-occurring with Past Medical History of Lyme Disease

    • Laritza M. Rodriguez ;
    • Dina Demner-Fushman

    Extracting Diseases Co-occurring with Past Medical History of Lyme Disease


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    A Data Warehouse Linking EHR, Registry and Research Omics Data for Clinical Audits and Translational Research

    • Anastassia Spiridou ;
    • the NIHR Health Informatics Collaborative NIHR HIC ;
    • Syed Hasan ;
    • Bolaji Coker ;
    • Stevo Durbaba ;
    • Jonathan Smith ;
    • S G ;
    • Florence Delaney ;
    • Sofia Christakoudi ;
    • Rosa M. Montero ;
    • Elham Asgari ;
    • Rute Aguiar ;
    • Paramit Chowdhury ;
    • Maria Hernandez Fuentes

    A Data Warehouse Linking EHR, Registry and Research Omics Data for Clinical Audits and Translational Research


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    Deep Learning-Based Ventricle Segmentation in 3D MRIs

    • Sahana Srinivasan ;
    • Alfiia Galimzianova ;
    • Ziga Lesjak ;
    • Ziga Spiclin ;
    • Daniel Rubin

    Deep Learning-Based Ventricle Segmentation in 3D MRIs


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    Experiences and Lessons Learned From a New Functionality for Pharmacogenomics Clinical Decision Support in the Electronic Health Record

    • Joseph Sutton ;
    • Kelly Wix ;
    • Amen A. Amusan ;
    • Ann M. Moyer ;
    • Mary E. Karow ;
    • Wayne T. Nicholson ;
    • Dustin Basel ;
    • David Blair ;
    • Mark A. Parkulo ;
    • Pedro J. Caraballo

    Experiences and Lessons Learned From a New Functionality for Pharmacogenomics Clinical Decision Support in the Electronic Health Record


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    PBI Formalism: Enabling Flexible Pathway Analytics using Dynamic Knowledge Networks

    • Nattapon Thanintorn ;
    • Zainab Al-Taie ;
    • Olha Kholod ;
    • Dmitriy Shin ;
    • Ilker Ersoy ;
    • Richard Hammer

    PBI Formalism: Enabling Flexible Pathway Analytics using Dynamic Knowledge Networks


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    An Automated System of Providing Pharmacogenomic Recommendations for Specific Disease States

    • Dyson Wake ;
    • Henry Dunnenberger ;
    • Kamalakar Gulukota ;
    • Donald L. Helseth ;
    • Peter Hulick ;
    • Janardan Khandekar

    An Automated System of Providing Pharmacogenomic Recommendations for Specific Disease States


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    Bi-EB: an Empirical Bayesian Bi-clustering for co- patterns of omics crossing tumors and cancer cells

    • Aida Yazdanparast ;
    • Lang Li ;
    • Lijun Cheng

    Bi-EB: an Empirical Bayesian Bi-clustering for co- patterns of omics crossing tumors and cancer cells


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    Data-Driven Analyses on a Nationwide Insurance Claims Dataset Revealed the Comorbidity Landscape of Tuberous Sclerosis Complex

    • Kun-Hsing Yu ;
    • Oren Miron ;
    • Nathan Palmer ;
    • Dario Lemos ;
    • Mustafa Sahin ;
    • Isaac S. Kohane

    Data-Driven Analyses on a Nationwide Insurance Claims Dataset Revealed the Comorbidity Landscape of Tuberous Sclerosis Complex


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    Integrative Transcriptome-Histopathology Analysis Revealed Insights into the Hormone Receptor Status of Breast Cancer Patients

    • William Yuan ;
    • Isaac S. Kohane ;
    • Kun-Hsing Yu

    Integrative Transcriptome-Histopathology Analysis Revealed Insights into the Hormone Receptor Status of Breast Cancer Patients


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    CytoSpell (CytoGenetic Spell Check)

    • Lin Zhang ;
    • Zach Abrams ;
    • Philip Payne

    CytoSpell (CytoGenetic Spell Check)


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    Radiation Induced Adverse Events Reported in Radiation Therapy Studies

    • Yi Zhen ;
    • Saugat B. Karki ;
    • Jackie Wu ;
    • Yaorong Ge

    Radiation Induced Adverse Events Reported in Radiation Therapy Studies


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    Artificial Neural Networks of Lung Cancer TGCA Clinical Data for Predicting Patient Survival

    • Kedi Zheng ;
    • Sam Cho ;
    • Umit Topaloglu

    Artificial Neural Networks of Lung Cancer TGCA Clinical Data for Predicting Patient Survival


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